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Comments on How to delete contents of a specific field, if it matches a pattern and there is nothing else in the field

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How to delete contents of a specific field, if it matches a pattern and there is nothing else in the field

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How do I delete contents of a specific field, if it matches a pattern, and there is nothing else in the field? I have a several GB tsv file, and I am interested in a specific field (72). If it contains hyphens, and only hyphens, then I want the hyphens deleted, leaving a blank field. I am using Ubuntu 20.04, with GNU awk v5. I've tried something like this:

awk 'BEGIN{FS=OFS="\t"}{gsub(/-/,"",$72)}1' file.tsv

But that also deletes the hyphens if there are other characters in the field too, which I do not want. E.g.

blah------

becomes

blah

but I want to leave it unchanged; but change

---------------

to nothing.

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You're matching the regex pattern of /-/, so it just matches every individual hyphen, regardless of where. You want to match the entire entry if it's only hyphens, or /^-+$/.

^ – Beginning of line
-+ – One or more hyphens
$ – End of line

Putting that in gives

awk 'BEGIN{FS=OFS="\t"}{gsub(/^-+$/,"",$72)}1' file.tsv

which does what you want.

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1 comment thread

While using `gsub()` won't hurt, aside from maybe a small performance hit and making readers wonder w... (1 comment)
While using `gsub()` won't hurt, aside from maybe a small performance hit and making readers wonder w...
Ed Morton‭ wrote over 2 years ago

While using gsub() won't hurt, aside from maybe a small performance hit and making readers wonder what use case you're considering by using it, you should be using sub() for this as you're only doing 1 substitution (of the entire field at once).